Table 4 Performance comparison between iProDNA-CapsNet and other state-of-the-art methods
From: iProDNA-CapsNet: identifying protein-DNA binding residues using capsule neural networks
Method | Setting | ACC (%) | SN (%) | SP (%) | PR (%) | MCC |
|---|---|---|---|---|---|---|
BindN | Unknown | 79.15 | 45.64 | 80.90 | 11.12 | 0.143 |
ProteDNA | Unknown | 95.11 | 4.77 | 99.84 | 60.30 | 0.160 |
MetaDBSite | Unknown | 90.41 | 34.20 | 93.35 | 21.22 | 0.221 |
DP-Bind | Unknown | 81.40 | 61.72 | 82.43 | 15.53 | 0.241 |
DNABind | Unknown | 79.78 | 70.16 | 80.28 | 15.70 | 0.264 |
BindN+ | FPR ≈ 5% | 91.58 | 24.11 | 95.11 a | 20.51 | 0.178 |
|  | FPR ≈ 15% | 83.69 | 50.81 | 85.41 | 15.42 | 0.213 |
TargetDNA | FPR ≈ 5% | 90.89 | 45.50 a | 93.27 | 26.13 | 0.300 |
|  | FPR ≈ 15% | 84.52 b | 60.22 | 85.79 b | 18.16 | 0.269 |
iProDNA-CapsNet | FPR ≈ 5% | 92.38 a | 42.17 | 94.93 | 29.78 a | 0.315 a |
|  | FPR ≈ 15% | 84.05 | 65.38 b | 85.00 | 18.17 b | 0.285 b |