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Table 4 Performance comparison between iProDNA-CapsNet and other state-of-the-art methods

From: iProDNA-CapsNet: identifying protein-DNA binding residues using capsule neural networks

MethodSettingACC (%)SN (%)SP (%)PR (%)MCC
BindNUnknown79.1545.6480.9011.120.143
ProteDNAUnknown95.114.7799.8460.300.160
MetaDBSiteUnknown90.4134.2093.3521.220.221
DP-BindUnknown81.4061.7282.4315.530.241
DNABindUnknown79.7870.1680.2815.700.264
BindN+FPR ≈ 5%91.5824.1195.11 a20.510.178
 FPR ≈ 15%83.6950.8185.4115.420.213
TargetDNAFPR ≈ 5%90.8945.50 a93.2726.130.300
 FPR ≈ 15%84.52 b60.2285.79 b18.160.269
iProDNA-CapsNetFPR ≈ 5%92.38 a42.1794.9329.78 a0.315 a
 FPR ≈ 15%84.0565.38 b85.0018.17 b0.285 b
  1. Values which are significantly higher than the others are in bold with aFPR ≈ 5% and bFPR ≈ 15%