Table 1 Computation times of the major functions of the package perfectphyloR for 200 sequences comprised of 2747 SNVs
From: perfectphyloR: An R package for reconstructing perfect phylogenies
Function | Computation Time (minutes) | |
|---|---|---|
| Â | No permutation | 1000 permutations |
reconstructPP() | Few seconds | NA |
reconstructPPregion() | 12.00 | NA |
testDendAssoRI() | 1.12 | 70.00 |
testAssoDist() | 0.28 | 193.71 |