Table 1 The performance comparison of BCREval and Bismark
From: BCREval: a computational method to estimate the bisulfite conversion ratio in WGBS
ENCODE ID | File Size | Reads Number | Processing Time | Memory Usage | CHH methylation ratio % | |||
|---|---|---|---|---|---|---|---|---|
Bismark | BCREval | Bismark | BCREval | Bismark | BCREval | |||
ENCFF055UXZ | 1.1G | 12 M | 4 h 49 m | 10 m | 10G | 44 M | 0.7 | 0.56 |
ENCFF336KJH | 687 M | 12 M | 4 h 8 m | 9 m | 10G | 44 M | 0.5 | 0.54 |
ENCFF677BSB | 926 M | 12 M | 5 h 28 m | 9 m | 10G | 44 M | 1.1 | 0.42 |
ENCFF781BRM | 833 M | 12 M | 5 h 5 m | 9 m | 10G | 44 M | 0.5 | 0.26 |
ENCFF710XQC | 1011 M | 12 M | 5 h 5 m | 10 m | 10G | 44 M | 0.8 | 0.45 |
ENCFF211RZY | 1.1G | 12 M | 4 h 39 m | 10 m | 10G | 44 M | 0.5 | 0.17 |
ENCFF563QAT | 821 M | 12 M | 4 h 31 m | 8 m | 10G | 44 M | 0.5 | 0.18 |
ENCFF311PSV | 686 M | 12 M | 4 h 36 m | 10 m | 10G | 44 M | 1.1 | 0.3 |