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Table 2 Taxonomic classification of Papillomaviridae-related reads from Sample 5

From: PVAmpliconFinder: a workflow for the identification of human papillomaviruses from high-throughput amplicon sequencing

 

Putative New

Putative Known

N total sequences

N = 2 (5 reads)

N = 39 (60,892 reads)

N sequence showen

N = 1 (3 reads)

N = 1 (4211 reads)

 

Megablast

BlastN

RaxML-EPA

Megablast

BlastN

RaxML-EPA

Alpha

–

–

–

–

–

–

Beta

–

–

–

–

–

–

Gamma

3 (100%)

3 (100%)

3 (100%)

–

4211 (100%)

–

Unclassified

–

–

–

4211 (100%)

–

4211 (100%)

Lambda

–

–

–

–

–

–

Tau

–

–

–

–

–

–