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Table 1 Running times on real data

From: Variable-order reference-free variant discovery with the Burrows-Wheeler Transform

coverage

BCR (BWT)

ebwt2InDel

DiscoSnp++

10

1:03:02

0:51:05

00:54:07

20

2:08:52

1:24:00

01:09:06

30

3:19:18

2:20:14

01:21:31

40

4:22:06

2:55:45

01:37:41

48

5:11:35

3:57:26

01:42:50

  1. We also show the times required to build the BWT using the tool BCR. All tools were run using one core only
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BMC Bioinformatics

ISSN: 1471-2105

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