Table 2 Runtimes (Speedup) of RainDrop for different numbers of CPU threads on the neurons_900 and neurons_9k dataset
From: RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
Method | RainDrop | |
|---|---|---|
Dataset | neurons_900 | neurons_9k |
1 Threads | 18m42s (1) | 189m15s (1) |
2 Threads | 10m58s (1.67) | 128m12s (1.48) |
4 Threads | 5m42s (3.21) | 59m34s (3.18) |
8 Threads | 3m16s (5.62) | 31m55s (5.94) |
16 Threads | 1m59s (9.25) | 19m24s (9.76) |