From: RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
Method | \(C_{neurons\_900}\) | \(C_{neuron\_9k}\) | \(C_{t\_4k}\) | Cpbmc8k |
---|---|---|---|---|
Alevin | \(\left [\begin {array}{ll}2197&56 \\ 12&28788\end {array}\right ]\) | \(\left [\begin {array}{ll}2151&42 \\ 15&28846\end {array}\right ]\) | \(\left [\begin {array}{ll}965&39 \\ 6&32528\end {array}\right ]\) | \(\left [\begin {array}{ll}1321&60 \\ 6&32151\end {array}\right ]\) |
CellRanger | \(\left [\begin {array}{ll}2205&31 \\ 14&28802\end {array}\right ]\) | \(\left [\begin {array}{ll}2160&21 \\ 15&28856\end {array}\right ]\) | \(\left [\begin {array}{ll}937&5 \\ 8&32588\end {array}\right ]\) | \(\left [\begin {array}{ll}1281&6 \\ 10&32240\end {array}\right ]\) |
Reference used | mm10-3.0.0 | mm10-3.0.0 | GRCh38-3.0.0 | GRCh38-3.0.0 |