From: RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
Method | \(G_{neurons\_900}\) | \(G_{neuron\_9k}\) | \(G_{t\_4k}\) | Gpbmc8k |
---|---|---|---|---|
Alevin | \(\left [\begin {array}{ll}179&8 \\ 1&1951\end {array}\right ]\) | \(\left [\begin {array}{ll}1136&22 \\ 9&10414\end {array}\right ]\) | \(\left [\begin {array}{ll}237&11 \\ 1&5207\end {array}\right ]\) | \(\left [\begin {array}{ll}469&38 \\ 2&9361\end {array}\right ]\) |
CellRanger | \(\left [\begin {array}{ll}180&3 \\ 1&1954\end {array}\right ]\) | \(\left [\begin {array}{ll}1158&14 \\ 10&10398\end {array}\right ]\) | \(\left [\begin {array}{ll}236&3 \\ 2&5216\end {array}\right ]\) | \(\left [\begin {array}{ll}466&18 \\ 3&9383\end {array}\right ]\) |
Reference used | mm10-3.0.0 | mm10-3.0.0 | GRCh38-3.0.0 | GRCh38-3.0.0 |