Table 1 Human transcriptome datasets selected for benchmarking
From: Extending rnaSPAdes functionality for hybrid transcriptome assembly
Dataset | Technology | # of reads | Strand-specific | Accession No |
|---|---|---|---|---|
Human siNT_48 | Illumina | 117 M | RF | SRP126849 |
|  | Iso-seq | 5.6 M | — | SRP126849 |
Human MCF7 | Illumina | 84 M | No | SRX426377 |
|  | Iso-seq | 1.8 M | — | — |
|  | Iso-seq FL | 0.5 M | — | — |
Human GM12878 | Illumina | 54 M | No | SRR3103887 |
|  | Nanopores | 10 M | — | — |