Table 7 Memory and time usage of different phases of OPTICALKERMIT
S. cerevisiae assembly memory and time usage | |||
|---|---|---|---|
| Â | Memory [MB] | Time [hh:mm:ss] | Time [%] |
Read-to-read alignment (minimap2) | 4 542 | 00:05:58 | 88.8 |
Pre-coloring assembly (miniasm+awk) | 179 | 00:00:07 | 1.7 |
Optical map alignment (create + alignment) | 44 | 00:00:05 | 1.2 |
Read-to-contig alignment (minimap2) | 561 | 00:00:23 | 5.7 |
Read coloring (contig+read coloring) | 112 | 00:00:03 | 0.7 |
Post-coloring assembly (Kermit+awk) | 179 | 00:00:07 | 1.7 |
Maximum memory / Total time | 4 542 | 00:06:43 | 100.0 |
C. elegans assembly memory and time usage | |||
| Â | Memory [MB] | Time [hh:mm:ss] | Time [%] |
Read-to-read alignment (minimap2) | 14 592 | 00:53:19 | 78.1 |
Pre-coloring assembly (miniasm+awk) | 1 131 | 00:01:59 | 2.9 |
Optical map alignment (create + alignment) | 818 | 00:05:08 | 7.5 |
Read-to-contig alignment (minimap2) | 2 057 | 00:03:30 | 5.1 |
Read coloring (contig+read coloring) | 1 613 | 00:02:30 | 3.7 |
Post-coloring assembly (Kermit+awk) | 1 131 | 00:01:52 | 2.7 |
Maximum memory / Total time | 14 592 | 01:08:18 | 100.0 |
A. thaliana assembly memory and time usage | |||
| Â | Memory [MB] | Time [hh:mm:ss] | Time [%] |
Read-to-read alignment (minimap2) | 15 210 | 05:52:37 | 82.6 |
Pre-coloring assembly (miniasm+awk) | 15 285 | 00:16:52 | 4.0 |
Optical map alignment (create + alignment) | 1 597 | 00:12:16 | 2.9 |
Read-to-contigs alignment (minimap2) | 2 479 | 00:19:57 | 4.7 |
Read coloring (contig+read coloring) | 3 952 | 00:01:39 | 0.4 |
Post-coloring assembly (Kermit+awk) | 15 413 | 00:23:18 | 5.5 |
Maximum memory / Total time | 15 413 | 07:06:39 | 100.0 |