Table 14 Execution times (milliseconds) required for DMR detection in different tools
From: HPG-DHunter: an ultrafast, friendly tool for DMR detection and visualization
Chrom. | methylKit | BSmooth | DSS-Ssingle | HPG-DHunter |
|---|---|---|---|---|
22 | 490603 | 492606 | 490508 | 94399 |
20 | 643062 | 642859 | 670401 | 103958 |
17 | 990127 | 989304 | 991321 | 190331 |
13 | 726562 | 725685 | 724213 | 74378 |
12 | 1229539 | 1220503 | 1221206 | 180999 |
11 | 1279281 | 1273718 | 1274000 | 214391 |
9 | 1164930 | 1161675 | 1173081 | 172293 |
8 | 958367 | 957953 | 953994 | 148693 |
7 | 1401475 | 1394688 | 1449790 | 190588 |
4 | 1420670 | 1402048 | 1449776 | 154287 |
3 | 1581448 | 1574495 | 1575470 | 218035 |
2 | 2034938 | 2017989 | 2196166 | 270559 |
Total (min.) | 232.02 | 230.89 | 236.17 | 33.55 |