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Table 3 Comparison of the results of the repertoire extraction process using the Galaxy and the TRIP tools

From: TRIP - T cell receptor/immunoglobulin profiler

Vgene T3396 GALAXY T3396 TRIP T3397 GALAXY T3397 TRIP T3404 GALAXY T3404 TRIP
TRBV10-1 0.2111 0.2144 0.1880 0.1903 0.0612 0.0619
TRBV10-2 0.5452 0.5493 1.0586 1.0712 0.2478 0.2475
TRBV10-3 1.4510 1.4648 0.9471 0.9443 3.4544 3.4799
TRBV11-1 1.9698 1.9873 2.0475 2.0437 0.3207 0.3241
TRBV11-2 2.8097 2.8448 2.1798 2.1987 2.2388 2.2571
TRBV11-3 0.3562 0.3617 0.0905 0.0916 0.1691 0.1709
TRBV12-3/12-4 10.2229 9.3114 8.1343 7.5476 9.2002 8.6687
TRBV12-5 0.9849 0.9914 1.9152 1.9309 0.8774 0.8840
TRBV13 0.6376 0.6476 2.7300 2.7484 0.1837 0.1856
TRBV14 0.4837 0.4912 0.4805 0.4863 0.6763 0.6836
TRBV15 0.7211 0.7324 0.6964 0.6977 1.6791 1.6943
TRBV18 3.9880 4.0461 2.9877 3.0233 2.9705 2.9996
TRBV19 7.6507 7.7662 7.5423 7.6321 8.0340 8.1089
TRBV2 1.8071 1.8265 1.9779 1.9944 0.7055 0.7131
TRBV20-1 4.0672 4.1220 4.0811 4.1297 3.0929 3.1263
TRBV24-1 0.3386 0.3439 0.2229 0.2255 1.2127 1.2199
TRBV25-1 0.4749 0.4778 0.4805 0.4863 0.3673 0.3713
TRBV27 5.5358 5.5913 6.5743 6.6173 4.4368 4.4729
TRBV28 2.1897 2.2061 2.8066 2.8330 2.6207 2.6372
TRBV29-1 8.1036 8.1904 8.2736 8.3298 7.3024 7.3664
TRBV30 0.2506 0.2546 0.0209 0.0211 3.1600 3.1941
TRBV3-1 0.2023 0.2054 0.1045 0.1057 0.0262 0.0265
TRBV4-1 2.6953 2.7331 3.1409 3.1783 0.6734 0.6777
TRBV4-2 0.6024 0.6118 0.2995 0.3030 1.9764 1.9978
TRBV4-3 0.0396 0.0402 0.0279 0.0282 1.5683 1.5852
TRBV5-1 7.8750 7.9895 7.6746 7.7590 8.4276 8.4978
TRBV5-4 5.0169 5.0956 4.2343 4.2777 3.9820 4.0191
TRBV5-5 2.4667 2.3669 2.0475 1.9662 3.1017 3.0320
TRBV5-6 3.1878 3.2199 2.9529 2.9528 3.6293 3.6537
TRBV5-8 0.2594 0.2635 0.5223 0.5285 0.1603 0.1621
TRBV6-1 2.4579 2.4964 2.6395 2.6709 2.4691 2.4957
TRBV6-2 1.9435 1.9561 2.6743 2.6850 2.7752 2.7756
TRBV6-4 0.7871 0.7994 0.1671 0.1691 0.9299 0.9399
TRBV6-5 6.3272 6.3326 6.6160 6.5610 5.5767 5.5071
TRBV6-6 2.1897 2.2106 2.1659 2.1776 2.7548 2.7756
TRBV6-8 0.0484 0.0491 0.0000 0.0000 0.0087 0.0088
TRBV6-9 0.0088 0.0089 0.0766 0.0775 0.0408 0.0413
TRBV7-2 2.2908 2.3223 1.7062 1.7266 5.9993 6.0198
TRBV7-3 0.8090 0.8173 0.5571 0.5638 0.1079 0.1090
TRBV7-4 0.0835 0.0804 0.0975 0.0987 0.0175 0.0177
TRBV7-6 0.3386 0.3349 0.8496 0.8598 0.1632 0.1650
TRBV7-7 0.1187 0.1206 0.0696 0.0705 0.0321 0.0324
TRBV7-8 2.1589 2.1793 3.0295 3.0585 0.9999 1.0107
TRBV7-9 2.9943 3.0413 2.6255 2.6568 1.4313 1.4468
TRBV9 0.2990 0.3037 0.2855 0.2819 0.1370 0.1355