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Table 3 Comparison of the results of the repertoire extraction process using the Galaxy and the TRIP tools

From: TRIP - T cell receptor/immunoglobulin profiler

Vgene

T3396 GALAXY

T3396 TRIP

T3397 GALAXY

T3397 TRIP

T3404 GALAXY

T3404 TRIP

TRBV10-1

0.2111

0.2144

0.1880

0.1903

0.0612

0.0619

TRBV10-2

0.5452

0.5493

1.0586

1.0712

0.2478

0.2475

TRBV10-3

1.4510

1.4648

0.9471

0.9443

3.4544

3.4799

TRBV11-1

1.9698

1.9873

2.0475

2.0437

0.3207

0.3241

TRBV11-2

2.8097

2.8448

2.1798

2.1987

2.2388

2.2571

TRBV11-3

0.3562

0.3617

0.0905

0.0916

0.1691

0.1709

TRBV12-3/12-4

10.2229

9.3114

8.1343

7.5476

9.2002

8.6687

TRBV12-5

0.9849

0.9914

1.9152

1.9309

0.8774

0.8840

TRBV13

0.6376

0.6476

2.7300

2.7484

0.1837

0.1856

TRBV14

0.4837

0.4912

0.4805

0.4863

0.6763

0.6836

TRBV15

0.7211

0.7324

0.6964

0.6977

1.6791

1.6943

TRBV18

3.9880

4.0461

2.9877

3.0233

2.9705

2.9996

TRBV19

7.6507

7.7662

7.5423

7.6321

8.0340

8.1089

TRBV2

1.8071

1.8265

1.9779

1.9944

0.7055

0.7131

TRBV20-1

4.0672

4.1220

4.0811

4.1297

3.0929

3.1263

TRBV24-1

0.3386

0.3439

0.2229

0.2255

1.2127

1.2199

TRBV25-1

0.4749

0.4778

0.4805

0.4863

0.3673

0.3713

TRBV27

5.5358

5.5913

6.5743

6.6173

4.4368

4.4729

TRBV28

2.1897

2.2061

2.8066

2.8330

2.6207

2.6372

TRBV29-1

8.1036

8.1904

8.2736

8.3298

7.3024

7.3664

TRBV30

0.2506

0.2546

0.0209

0.0211

3.1600

3.1941

TRBV3-1

0.2023

0.2054

0.1045

0.1057

0.0262

0.0265

TRBV4-1

2.6953

2.7331

3.1409

3.1783

0.6734

0.6777

TRBV4-2

0.6024

0.6118

0.2995

0.3030

1.9764

1.9978

TRBV4-3

0.0396

0.0402

0.0279

0.0282

1.5683

1.5852

TRBV5-1

7.8750

7.9895

7.6746

7.7590

8.4276

8.4978

TRBV5-4

5.0169

5.0956

4.2343

4.2777

3.9820

4.0191

TRBV5-5

2.4667

2.3669

2.0475

1.9662

3.1017

3.0320

TRBV5-6

3.1878

3.2199

2.9529

2.9528

3.6293

3.6537

TRBV5-8

0.2594

0.2635

0.5223

0.5285

0.1603

0.1621

TRBV6-1

2.4579

2.4964

2.6395

2.6709

2.4691

2.4957

TRBV6-2

1.9435

1.9561

2.6743

2.6850

2.7752

2.7756

TRBV6-4

0.7871

0.7994

0.1671

0.1691

0.9299

0.9399

TRBV6-5

6.3272

6.3326

6.6160

6.5610

5.5767

5.5071

TRBV6-6

2.1897

2.2106

2.1659

2.1776

2.7548

2.7756

TRBV6-8

0.0484

0.0491

0.0000

0.0000

0.0087

0.0088

TRBV6-9

0.0088

0.0089

0.0766

0.0775

0.0408

0.0413

TRBV7-2

2.2908

2.3223

1.7062

1.7266

5.9993

6.0198

TRBV7-3

0.8090

0.8173

0.5571

0.5638

0.1079

0.1090

TRBV7-4

0.0835

0.0804

0.0975

0.0987

0.0175

0.0177

TRBV7-6

0.3386

0.3349

0.8496

0.8598

0.1632

0.1650

TRBV7-7

0.1187

0.1206

0.0696

0.0705

0.0321

0.0324

TRBV7-8

2.1589

2.1793

3.0295

3.0585

0.9999

1.0107

TRBV7-9

2.9943

3.0413

2.6255

2.6568

1.4313

1.4468

TRBV9

0.2990

0.3037

0.2855

0.2819

0.1370

0.1355

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BMC Bioinformatics

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