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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Explicit representation of protein activity states significantly improves causal discovery of protein phosphorylation networks

Fig. 5

The InferA algorithm converged well for the real-world data analysis. a The changes of the logarithm of joint probability for observed P nodes and V nodes with iteration numbers when initializing A nodes with random 0/1(initRand) or initializing A nodes with the corresponding P node values (initCopy). Values on both axes are in scientific formats. b The F1 scores of arc, adjacency and path increase with the logarithm of joint probability for initRand. X-axis values are represented by scientific notations. c The F1 scores of arc, adjacency and path increase with the logarithm of joint probability for initCopy. X-axis values are shown in scientific formats

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BMC Bioinformatics

ISSN: 1471-2105

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