Table 1 Assessment of CARD and VFDB hits reported by MAIRA
From: MAIRA- real-time taxonomic and functional analysis of long reads on a laptop
Organism | Classif. | TP (CDS) | FN (CDS) | TP (Term) | FP (Term) | FN (Term) |
|---|---|---|---|---|---|---|
Acinetobacter baumannii | CARD | 25 | 3 | 145 | 6 | 65 |
VFDB | 31 | 9 | 31 | 0 | 10 | |
Enterococcus faecalis | CARD | 22 | 5 | 24 | 2 | 26 |
VFDB | 23 | 3 | 23 | 0 | 5 | |
Escherichia coli | CARD | 69 | 6 | 81 | 22 | 22 |
VFDB | 102 | 27 | 123 | 0 | 36 | |
Klebsiella pneumoniae | CARD | 63 | 7 | 85 | 20 | 282* |
VFDB | 33 | 8 | 34 | 0 | 8 | |
Neisseria meningitidis | CARD | 15 | 1 | 16 | 1 | 5 |
VFDB | 31 | 8 | 30 | 0 | 12 | |
Pseudomonas aeruginosa | CARD | 55 | 15 | 87 | 7 | 38 |
VFDB | 119 | 16 | 119 | 0 | 22 | |
Staphylococcus aureus | CARD | 27 | 2 | 32 | 2 | 7 |
VFDB | 57 | 5 | 55 | 0 | 5 | |
Streptococcus agalactiae | CARD | 4 | 7 | 4 | 4 | 20 |
VFDB | 31 | 0 | 32 | 0 | 1 | |
Streptococcus pneumoniae | CARD | 17 | 1 | 19 | 8 | 14 |
VFDB | 11 | 2 | 11 | 0 | 4 | |
Streptococcus pyogenes | CARD | 4 | 8 | 4 | 4 | 16 |
VFDB | 29 | 1 | 29 | 0 | 3 |