Table 4 Agreement of different alignment methods for E. coli dataset
From: smsMap: mapping single molecule sequencing reads by locating the alignment starting positions
smsMap | lordFAST | BLASR | BWA-MEM | GraphMap | minimap2 | NGMLR | |
|---|---|---|---|---|---|---|---|
smsMap | N/A | 75.44 | 85.76 | 85.46 | 96.75 | 84.26 | 82.31 |
lordFAST | 87.33 | N/A | 78.61 | 83.20 | 97.27 | 83.70 | 80.53 |
BLASR | 95.23 | 74.70 | N/A | 93.56 | 97.90 | 92.14 | 90.76 |
BWA-MEM | 93.26 | 76.81 | 89.96 | N/A | 98.58 | 94.50 | 91.37 |
GraphMap | 85.35 | 74.09 | 78.14 | 83.69 | N/A | 82.02 | 80.78 |
minimap2 | 93.86 | 78.04 | 91.79 | 97.01 | 98.71 | N/A | 92.99 |
NGLMR | 92.52 | 75.13 | 91.82 | 95.19 | 97.63 | 94.25 | N/A |