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Table 4 Agreement of different alignment methods for E. coli dataset

From: smsMap: mapping single molecule sequencing reads by locating the alignment starting positions

  smsMap lordFAST BLASR BWA-MEM GraphMap minimap2 NGMLR
smsMap N/A 75.44 85.76 85.46 96.75 84.26 82.31
lordFAST 87.33 N/A 78.61 83.20 97.27 83.70 80.53
BLASR 95.23 74.70 N/A 93.56 97.90 92.14 90.76
BWA-MEM 93.26 76.81 89.96 N/A 98.58 94.50 91.37
GraphMap 85.35 74.09 78.14 83.69 N/A 82.02 80.78
minimap2 93.86 78.04 91.79 97.01 98.71 N/A 92.99
NGLMR 92.52 75.13 91.82 95.19 97.63 94.25 N/A
  1. Each row shows the percentage of best alignment from the corresponding method that covers alignments from other methods. Note that this table is dissymmetric