Fig. 1
From: AdmixPipe: population analyses in Admixture for non-model organisms
The workflow for AdmixPipe involves two files as Input: 1) a VCF-formatted file of genotypes, and 2) a tab-delimited population map. These proceed through admixturePipeline.py which handles filtering, file conversion, and execution of Admixture according to user-specified parameters. After completion, the user can submit their output to Clumpak for analysis. The resulting files can then be visualized using distructRerun.py, and variability in cross validation (CV) values is assessed using cvSum.py