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Table 1 Experimental results of predicting GO annotations of Maize and Human genome

From: Predicting functions of maize proteins using graph convolutional network

   Maize      Human     
   PR50 AUC AUPRC Smin Fmax PR50 AUC AUPRC Smin Fmax
BP DeepGOA 82.44 89.56 70.18 0.9965 67.53 55.20 69.79 62.20 19.7772 38.52
  DeepGOPlus 76.47 89.52 69.64 1.2193 59.61 53.61 68.74 60.75 20.0152 36.23
  DeepGO 64.41 85.39 62.91 1.2586 59.49 50.25 63.85 57.13 20.6061 32.71
  Deepred 67.39 84.95 63.02 1.3509 58.21 55.60 68.33 56.96 19.9538 38.07
  BLAST 32.61 71.77 28.96 1.1745 61.10 46.50 57.72 48.94 20.2695 33.92
  Navie 27.08 49.93 27.67 1.8957 29.32 51.94 49.98 56.61 20.4729 34.45
CC DeepGOA 96.33 87.73 75.78 0.6603 75.74 50.88 75.69 49.97 4.9029 62.92
  DeepGOPlus 91.21 82.51 77.84 0.8105 70.82 50.18 65.15 48.70 4.9488 62.75
  DeepGO 86.57 82.91 72.07 0.7759 71.08 43.60 69.51 44.81 5.1828 58.86
  Deepred 84.77 86.74 73.86 0.6952 69.85 44.58 75.94 44.58 5.8166 61.77
  BLAST 39.48 70.82 39.18 0.7904 62.02 21.25 56.27 26.91 5.0593 44.18
  Navie 48.14 49.98 43.74 1.2458 49.84 36.27 48.69 37.70 5.4474 55.15
MF DeepGOA 83.63 92.51 68.63 1.7024 58.10 68.64 82.03 70.98 4.7571 47.71
  DeepGOPlus 72.70 83.67 64.42 1.6777 51.25 67.84 81.86 69.38 4.8426 46.82
  DeepGO 68.78 88.22 59.91 1.8551 52.82 54.56 75.98 62.47 5.2581 40.43
  Deepred 62.89 89.73 57.65 2.287 45.49 62.68 81.30 62.01 5.1711 45.14
  BLAST 27.40 67.76 32.92 1.8274 51.40 42.33 62.34 46.11 4.9195 41.07
  Navie 28.44 51.04 28.84 2.7430 26.13 46.86 49.87 52.77 5.7466 32.59
  1. The best results for each metric are in boldface