BMC Bioinformatics

Table 5 F-measure values (as in (8)) for each cell type for \({\mathcal {C}}^{17}\) and \({\mathcal {C}}^{27}\) which are used to obtain the respective median F-measure value in Table 4

From: optimalFlow: optimal transport approach to flow cytometry gating and population matching

	\({\mathcal {C}}^{17}\)			\({\mathcal {C}}^{27}\)
	F-measure	Precision	Recall	F-measure	Precision	Recall
Abnormal Sig Kappa				0.9697	0.9478	0.9925
CD4+CD8\({-}\)	0.9973	0.9982	0.9965	0.9828	0.9796	0.9859
CD8+CD4\({-}\)	0.9960	0.9960	0.9960	0.9769	0.9835	0.9704
Neutrophils	0.9968	0.9959	0.9978	0.9421	0.9092	0.9775
Debris/Doublets	0.9692	0.9818	0.9570	0.7704	0.9111	0.6673
Monocytes	0.9679	0.9571	0.9791	0.8419	0.8475	0.8364
Mature Sig Lambda	0.9897	0.9939	0.9856	0.9561	0.9864	0.9277
Mature Sig Kappa	0.9923	0.9866	0.9981	0.9421	0.9421	0.9421
TCRgd\({-}\)	0.9810	0.9777	0.9843	0.5549	0.5698	0.5408
TCRgd\({-}\)	0.9403	0.9145	0.9677	0.8634	0.8195	0.9122
CD4+CD8dim	0.9452	0.9504	0.9401	0.5899	0.7111	0.5039
NK cells				0.9313	0.9433	0.9196
Myeloid Cells				0.8321	0.9489	0.7409
CD56dim	0.9827	0.9683	0.9975
Eosinophils	0.9722	0.9713	0.9732
Monocytoid DC	0.9563	0.9713	0.9417
Basophils	0.9123	0.9877	0.8476
Neutrophils (U.S.)	0.7632	0.7106	0.8242
Myeloid DC	0.8908	0.8413	0.9464
CD56bright	0.8785	0.9860	0.7921
Plasmocytoid DC	0.7790	0.8011	0.7581
Plasma Cells	0.9677	1.0000	0.9375

Recall and precision are defined in (9)

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