Fig. 6

The haplotype region identification and analysis combined with Hi-C data. a The distribution of DNA methylation on Hi-C reads at the haplotype level. The inner circle represents the proportion of Hi-C reads with the same or different DNA methylation status at the two ends of individual paired-end reads. The outer circle represents the proportion of reads with the same or different DNA methylation status at the two ends of individual paired-end reads when the pairing of the paired-end Hi-C reads was randomly shuffled (P value < 2.2e−16, Fisher's exact test). b The relationship between ASEGs and Allele-specific HiC bins (ASHs). The left and right bars represent the proportions of ASEG in ASHs and all-HiC bins, respectively. Fisher's exact test was used in significance analysis