Table 2 Map and minor allele frequency information of each SNP randomly selected in the sprious pleiotropy simulation presented in Listing 1, as well as those selected to be additive quantitative trait nucleotides (QTNs)
From: simplePHENOTYPES: SIMulation of pleiotropic, linked and epistatic phenotypes
Replication | Marker type | Marker | Allele | Chromosome | Position | \(\hbox {cM}^*\) | \(\hbox {MAF}^{**}\) |
|---|---|---|---|---|---|---|---|
1 | cause_of_LD | ss196453961 | A/G | 4 | 68,182,921 | NA | 0.50 |
1 | cause_of_LD | ss196498075 | A/G | 10 | 87,305,008 | NA | 0.50 |
1 | cause_of_LD | ss196495963 | G/A | 10 | 52,568,307 | NA | 0.50 |
1 | QTN_upstream | ss196453979 | G/A | 4 | 68,369,212 | NA | 0.50 |
1 | QTN_upstream | ss196498083 | A/C | 10 | 87,799,475 | NA | 0.50 |
1 | QTN_upstream | ss196496034 | G/A | 10 | 54,432,827 | NA | 0.50 |
1 | QTN_downstream | ss196453929 | C/A | 4 | 67,678,951 | NA | 0.50 |
1 | QTN_downstream | ss196498065 | A/G | 10 | 87,189,608 | NA | 0.50 |
1 | QTN_downstream | ss196496813 | C/A | 10 | 49,693,682 | NA | 0.50 |