Table 3 Summary linkage disequilibrium information on quantitative trait nucleotide of different traits
From: simplePHENOTYPES: SIMulation of pleiotropic, linked and epistatic phenotypes
Replication | Marker causing \(\hbox {LD}^*\) | input LD (absolute value) | Actual LD with \(\hbox {QTN}^{**}\) of Trait 1 | Actual LD with QTN of Trait 2 | QTN for Trait 1 | QTN for Trait 2 | LD between QTNs |
|---|---|---|---|---|---|---|---|
1 | ss196453961 | 0.70 | 0.16 | 0.11 | ss196453929 | ss196453979 | 0.11 |
1 | ss196498075 | 0.70 | 0.24 | 0.45 | ss196498065 | ss196498083 | \(-0.35\) |
1 | ss196495963 | 0.70 | 0.66 | 0.62 | ss196496813 | ss196496034 | 0.62 |