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Table 8 Time of particle picking using different hardware systems (GPU and CPU) on different micrograph dimensions

From: DeepCryoPicker: fully automated deep neural network for single protein particle picking in cryo-EM

Dataset

Evaluation metric

Micrograph dimension

Number of tested micrograph

Testing time (per micrograph) on CPU (min)

Testing time (per micrograph) on GPU (min)

Apoferritin top-view protein shape

3374 × 3374

10

15.8

1.7

KLH (top and side-view) protein shape

2048 × 2048

17

11.3

1.2

Ribosome irregular protein shape

4030 × 4030

52

17.2

2.3

β-Galactosidase complex protein shape

4608 × 4608

15

18.6

2.6

  1. The first column shows the original test micrographs dimensions. The second and third columns illustrate the testing time per micrograph on both CPU and GPU systems respectively
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BMC Bioinformatics

ISSN: 1471-2105

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