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Table 8 Time of particle picking using different hardware systems (GPU and CPU) on different micrograph dimensions

From: DeepCryoPicker: fully automated deep neural network for single protein particle picking in cryo-EM

Dataset Evaluation metric
Micrograph dimension Number of tested micrograph Testing time (per micrograph) on CPU (min) Testing time (per micrograph) on GPU (min)
Apoferritin top-view protein shape 3374 × 3374 10 15.8 1.7
KLH (top and side-view) protein shape 2048 × 2048 17 11.3 1.2
Ribosome irregular protein shape 4030 × 4030 52 17.2 2.3
β-Galactosidase complex protein shape 4608 × 4608 15 18.6 2.6
  1. The first column shows the original test micrographs dimensions. The second and third columns illustrate the testing time per micrograph on both CPU and GPU systems respectively