Graph embeddings on gene ontology annotations for protein–protein interaction prediction

BMC Bioinformatics

Table 3 AUC-ROC values between our method between using undirected graphs and using directed graphs for missing PPI prediction

GO	Model	Human	Mouse	Yeast
BP	svm	0.8814	0.8728	0.8889
	mhd	0.8676	0.8527	0.8718
	cos	0.8513	0.8419	0.8674
	d_svm	0.8354	0.8167	0.8279
	d_mhd	0.8134	0.8038	0.8295
	d_cos	0.8027	0.7924	0.8246
CC	svm	0.8396	0.8517	0.8358
	mhd	0.8237	0.8349	0.8146
	cos	0.8027	0.8196	0.8035
	d_svm	0.7968	0.8102	0.7991
	d_mhd	0.7837	0.8001	0.7766
	d_cos	0.7712	0.7931	0.7613
MF	svm	0.8397	0.8608	0.8411
	mhd	0.8223	0.8316	0.8253
	cos	0.8115	0.8145	0.8243
	d_svm	0.7954	0.8196	0.8007
	d_mhd	0.7884	0.7765	0.7835
	d_cos	0.7716	0.7664	0.7769

ISSN: 1471-2105