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Table 3 AUC-ROC values between our method between using undirected graphs and using directed graphs for missing PPI prediction

From: Graph embeddings on gene ontology annotations for protein–protein interaction prediction

GO Model Human Mouse Yeast
BP svm 0.8814 0.8728 0.8889
mhd 0.8676 0.8527 0.8718
cos 0.8513 0.8419 0.8674
d_svm 0.8354 0.8167 0.8279
d_mhd 0.8134 0.8038 0.8295
d_cos 0.8027 0.7924 0.8246
CC svm 0.8396 0.8517 0.8358
mhd 0.8237 0.8349 0.8146
cos 0.8027 0.8196 0.8035
d_svm 0.7968 0.8102 0.7991
d_mhd 0.7837 0.8001 0.7766
d_cos 0.7712 0.7931 0.7613
MF svm 0.8397 0.8608 0.8411
mhd 0.8223 0.8316 0.8253
cos 0.8115 0.8145 0.8243
d_svm 0.7954 0.8196 0.8007
d_mhd 0.7884 0.7765 0.7835
d_cos 0.7716 0.7664 0.7769
  1. “d” stands for directed graph