Table 3 The results of feature selection for M. musculus
From: m5CPred-SVM: a novel method for predicting m5C sites of RNA
Feature subset | KS | BC | Sn (%) | Sp (%) | Pre (%) | Acc (%) | Mcc | F1score | AUC |
|---|---|---|---|---|---|---|---|---|---|
CPD | 4 | 1 | 74.0 | 73.1 | 73.3 | 73.6 | 0.461 | 0.737 | 0.812 |
1SPSDP | 16 | 8192 | 73.0 | 72.6 | 72.7 | 72.8 | 0.456 | 0.728 | 0.803 |
PSNP | 8 | 8192 | 75.2 | 69.1 | 70.9 | 72.2 | 0.444 | 0.730 | 0.794 |
4NF | 0.125 | 0.5 | 68.0 | 66.1 | 66.8 | 67.1 | 0.341 | 0.674 | 0.730 |
PseDNC | 0.5 | 256 | 65.1 | 66.2 | 65.8 | 65.7 | 0.313 | 0.655 | 0.715 |
1SNPF | 1 | 8 | 65.5 | 64.2 | 64.7 | 64.9 | 0.298 | 0.652 | 0.702 |
CPD + 1SPSDP | 4 | 1 | 74.1 | 73.1 | 73.3 | 73.6 | 0.472 | 0.737 | 0.813 |
CPD + PSNP | 4 | 1 | 74.2 | 73.0 | 73.3 | 73.6 | 0.472 | 0.738 | 0.813 |
CPD + 4NF | 32 | 256 | 75.1 | 72.7 | 73.3 | 73.9 | 0.478 | 0.742 | 0.815 |
CPD + PseDNC | 64 | 4096 | 75.4 | 72.4 | 73.2 | 73.9 | 0.478 | 0.743 | 0.813 |
CPD + 1SNPF | 8 | 2 | 74.8 | 72.3 | 73.0 | 73.6 | 0.471 | 0.739 | 0.811 |
CPD + 4NF + 1SNPF | 32 | 256 | 75.3 | 72.7 | 73.4 | 74.0 | 0.480 | 0.743 | 0.816 |
CPD + 4NF + PSNP | 32 | 256 | 75.2 | 72.7 | 73.3 | 73.9 | 0.479 | 0.742 | 0.815 |
CPD + 4NF + 1SPSDP | 64 | 4096 | 75.7 | 72.8 | 73.6 | 74.3 | 0.486 | 0.746 | 0.822 |
CPD + 4NF + PseDNC | 32 | 256 | 75.4 | 72.7 | 73.4 | 74.0 | 0.48 | 0.744 | 0.816 |
CPD + 4NF + 1SPSDP + 1SNPF | 64 | 2048 | 76.0 | 72.9 | 73.8 | 74.5 | 0.490 | 0.749 | 0.822 |
CPD + 4NF + 1SPSDP + PSNP | 64 | 4096 | 75.7 | 72.8 | 73.6 | 74.2 | 0.485 | 0.746 | 0.822 |
CPD + 4NF + 1SPSDP + PseDNC | 64 | 4096 | 75.7 | 72.8 | 73.6 | 74.2 | 0.485 | 0.746 | 0.822 |