Skip to main content

Table 3 The results of feature selection for M. musculus

From: m5CPred-SVM: a novel method for predicting m5C sites of RNA

Feature subset KS BC Sn (%) Sp (%) Pre (%) Acc (%) Mcc F1score AUC
CPD 4 1 74.0 73.1 73.3 73.6 0.461 0.737 0.812
1SPSDP 16 8192 73.0 72.6 72.7 72.8 0.456 0.728 0.803
PSNP 8 8192 75.2 69.1 70.9 72.2 0.444 0.730 0.794
4NF 0.125 0.5 68.0 66.1 66.8 67.1 0.341 0.674 0.730
PseDNC 0.5 256 65.1 66.2 65.8 65.7 0.313 0.655 0.715
1SNPF 1 8 65.5 64.2 64.7 64.9 0.298 0.652 0.702
CPD + 1SPSDP 4 1 74.1 73.1 73.3 73.6 0.472 0.737 0.813
CPD + PSNP 4 1 74.2 73.0 73.3 73.6 0.472 0.738 0.813
CPD + 4NF 32 256 75.1 72.7 73.3 73.9 0.478 0.742 0.815
CPD + PseDNC 64 4096 75.4 72.4 73.2 73.9 0.478 0.743 0.813
CPD + 1SNPF 8 2 74.8 72.3 73.0 73.6 0.471 0.739 0.811
CPD + 4NF + 1SNPF 32 256 75.3 72.7 73.4 74.0 0.480 0.743 0.816
CPD + 4NF + PSNP 32 256 75.2 72.7 73.3 73.9 0.479 0.742 0.815
CPD + 4NF + 1SPSDP 64 4096 75.7 72.8 73.6 74.3 0.486 0.746 0.822
CPD + 4NF + PseDNC 32 256 75.4 72.7 73.4 74.0 0.48 0.744 0.816
CPD + 4NF + 1SPSDP + 1SNPF 64 2048 76.0 72.9 73.8 74.5 0.490 0.749 0.822
CPD + 4NF + 1SPSDP + PSNP 64 4096 75.7 72.8 73.6 74.2 0.485 0.746 0.822
CPD + 4NF + 1SPSDP + PseDNC 64 4096 75.7 72.8 73.6 74.2 0.485 0.746 0.822