Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network

Table 2 Average AUC values of SEPT and SEP by training on the six cell lines data and test on one other cell line data in running 10 times

Test cell line	Cell line(s) of source domain	Model	AUC
GM12878	HMEC, HUVEC, HeLa-S3, IMR90, K562, NHEK	SEP	0.65
GM12878	HMEC, HUVEC, HeLa-S3, IMR90, K562, NHEK	SEPT	0.72
HMEC	GM12878, HUVEC, HeLa-S3, IMR90, K562, NHEK	SEP	0.68
HMEC	GM12878, HUVEC, HeLa-S3, IMR90, K562, NHEK	SEPT	0.76
HUVEC	GM12878, HMEC, HeLa-S3, IMR90, K562, NHEK	SEP	0.69
HUVEC	GM12878, HMEC, HeLa-S3, IMR90, K562, NHEK	SEPT	0.78
HeLa-S3	GM12878, HMEC, HUVEC, IMR90, K562, NHEK	SEP	0.69
HeLa-S3	GM12878, HMEC, HUVEC, IMR90, K562, NHEK	SEPT	0.77
IMR90	GM12878, HMEC, HUVEC, HeLa-S3, K562, NHEK	SEP	0.72
IMR90	GM12878, HMEC, HUVEC, HeLa-S3, K562, NHEK	SEPT	0.78
K562	GM12878, HMEC, HUVEC, HeLa-S3, IMR90, NHEK	SEP	0.65
K562	GM12878, HMEC, HUVEC, HeLa-S3, IMR90, NHEK	SEPT	0.73
NHEK	GM12878, HMEC, HUVEC, HeLa-S3, IMR90, K562	SEP	0.69
NHEK	GM12878, HMEC, HUVEC, HeLa-S3, IMR90, K562	SEPT	0.76

ISSN: 1471-2105