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Table 1 Number of samples, dataset_id and URLs to download the gene expression and copy number data from UCSC Xena data server

From: Investigating the relevance of major signaling pathways in cancer survival using a biologically meaningful deep learning model

Cancer type DataSet URLs
BRCA
(n = 1057)
HiSeqV2_PANCAN https://xenabrowser.net/datapages/?cohort=TCGA%20Breast%20Cancer%20(BRCA)&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes
LUAD
(n = 500)
HiSeqV2_PANCAN https://xenabrowser.net/datapages/?cohort=TCGA%20Lung%20Adenocarcinoma%20(LUAD)&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes
GBM
(n = 484)
HiSeqV2_PANCAN https://xenabrowser.net/datapages/?cohort=TCGA%20Glioblastoma%20(GBM)&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes
SKCM
(n = 358)
HiSeqV2_PANCAN https://xenabrowser.net/datapages/?cohort=TCGA%20Melanoma%20(SKCM)&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes