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Table 1 Whole-genome long-read sequencing datasets used in the current version of RepeatHMM-scan

From: Genome-wide detection of short tandem repeat expansions by long-read sequencing

Genome name #Long reads Mapped coverage
NA12878 [33] 68,064,542 54X
NA24385 [33] 26,325,971 55X
NA24149 [33] 12,927,769 26X
NA24143 [33] 12,655,875 26X
NA24631 [33] 20,640,162 56X
NA24694 [43] 10,211,241 28X
NA24695 [43] 10,075,227 28X
AK1 [32] 1,082,595,779 297X
CHM1 [35] 49,203,975 100X
CHM13 [44] 69,236,262 176X
HG00268 [34] 18,556,018 81X
HG00514 [34] 51,979,497 213X
HG00733 [34] 38,400,667 143X
HG01352 [34] 33,512,701 144X
HG02059 [34] 43,154,257 155X
HG02106 [34] 20,165,840 71X
HG02818 [34] 51,357,293 224X
HG04217 [34] 68,629,541 203X
NA19240 [34] 48,378,501 125X
NA19434 [34] 32,040,706 147X
HX1 [30] 27,541,832 84X
  1. Reference assembly is GRCh38/hg38. All samples except HX1 were sequenced by the PacBio SMRT technology, while HX1 was sequenced by the Oxford Nanopore technology. CHM1 and CHM13 are haploid human genomes