Table 1 Whole-genome long-read sequencing datasets used in the current version of RepeatHMM-scan
From: Genome-wide detection of short tandem repeat expansions by long-read sequencing
Genome name | #Long reads | Mapped coverage |
|---|---|---|
NA12878 [33] | 68,064,542 | 54X |
NA24385 [33] | 26,325,971 | 55X |
NA24149 [33] | 12,927,769 | 26X |
NA24143 [33] | 12,655,875 | 26X |
NA24631 [33] | 20,640,162 | 56X |
NA24694 [43] | 10,211,241 | 28X |
NA24695 [43] | 10,075,227 | 28X |
AK1 [32] | 1,082,595,779 | 297X |
CHM1 [35] | 49,203,975 | 100X |
CHM13 [44] | 69,236,262 | 176X |
HG00268 [34] | 18,556,018 | 81X |
HG00514 [34] | 51,979,497 | 213X |
HG00733 [34] | 38,400,667 | 143X |
HG01352 [34] | 33,512,701 | 144X |
HG02059 [34] | 43,154,257 | 155X |
HG02106 [34] | 20,165,840 | 71X |
HG02818 [34] | 51,357,293 | 224X |
HG04217 [34] | 68,629,541 | 203X |
NA19240 [34] | 48,378,501 | 125X |
NA19434 [34] | 32,040,706 | 147X |
HX1 [30] | 27,541,832 | 84X |