Table 2 Comparison of the refined panda genome with SOAPdenovo-assembled genome
From: LDscaff: LD-based scaffolding of de novo genome assemblies
Cutoff | Scaffolds before | Scaffolds after | N50 before | N50 after |
|---|---|---|---|---|
0.1 | 57 | 57 | 1335486 | 1158329675 |
0.15 | 57 | 254 | 1335486 | 20717847 |
0.2 | 57 | 1344 | 1335486 | 3358889 |
0.25 | 57 | 2123 | 1335486 | 1962870 |
0.3 | 57 | 2509 | 1335486 | 1625199 |
0.4 | 57 | 2843 | 1335486 | 1413235 |
0.5 | 57 | 2953 | 1335486 | 1353331 |
0.6 | 57 | 2981 | 1335486 | 1336590 |
0.7 | 57 | 2983 | 1335486 | 1335486 |