Table 4 Comparative study of running time, percentage of reads aligned and coverage by different aligners for H.sapiens-real SMRT dataset of 23,235 reads
From: S-conLSH: alignment-free gapped mapping of noisy long reads
Mapper | Indexing time (s) | Mapping time (s) | % of reads aligned | Mean coverage |
|---|---|---|---|---|
Minimap | 140 | 30 | 94.8 | NA |
Minimap2 | 138 | 106 | 100 | 0.0473 |
lordFAST | 2286 | 327 | 100 | 0.0566 |
conLSH | 47 | 404 | 99 | 0.0579 |
S-conLSH | 794 | 99 | 99.9 | 0.078 |