H2V: a database of human genes and proteins that respond to SARS-CoV-2, SARS-CoV, and MERS-CoV infection

BMC Bioinformatics

Table 1 Studies and strategies used to identify response genes/proteins

¹If a PMID was not available, an alternative database accession number is used
a: Response genes/proteins were extracted from the journal article
b: Response genes/proteins were identified from RNA-seq data using RaNA-seq, with p < 0.05 and |log2(fold change)|> 1 at any timepoint post infection
c: Response genes/proteins were identified from read counts from GEO using DESeq2, with p < 0.05 and |log2(fold change)|> 1 at any timepoint post infection
d: Response genes/proteins were identified from the expression matrix from GEO using limma, with p < 0.05 and |log2(fold change)|> 1 at any timepoint post infection

ISSN: 1471-2105