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Fig. 7 | BMC Bioinformatics

Fig. 7

From: DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks

Fig. 7

Comparisons of known motifs and matching motifs learned by pairwise attention module in CTCF and FOXA1. (a) Sequence logo built from subsequences detected in CTCF/induced pluripotent cell prediction (left) and motif MA0139.1/ CTCF (right). (b) The attention scores of the samples selected from CTCF/induced pluripotent cell prediction with hits of MA0139.1/ CTCF in FIMO. (c)The relative positions of the detected motifs in the same region of (b). (d) The normalized DNase-Seq scores in the same region of (b). (e) Sequence logo built from subsequences detected in FOXA1/liver cell prediction (left) and motif MA0148.4/ FOXA1 (right). (f) The attention scores of the samples selected from FOXA1/liver cell prediction with hits of MA0148.4/ FOXA1 in FIMO. (g) The relative positions of the detected motifs in the same region of (f). (h) The normalized DNase-Seq scores in the same region of (f)

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BMC Bioinformatics

ISSN: 1471-2105

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