Accurately estimating the length distributions of genomic micro-satellites by tumor purity deconvolution

BMC Bioinformatics

Table 4 Comparisons of the performance of ELMSI in different coverages

Number of MSIs	Coverage	Accuracy	Recall	Precision	Gain	MCC
20	10 ×	0.3667	0.5500	0.5238	0.05	-0.4629
	20 ×	0.3846	0.5000	0.5714	0.20	-0.4330
	30 ×	0.4167	0.5263	0.6429	0.26	-0.3974
	40 ×	0.4815	0.6500	0.6500	0.30	-0.3500
	50 ×	0.6957	0.8000	0.8421	0.65	-0.1777
	60 ×	0.6818	0.7895	0.8333	0.63	-0.1873
	70 ×	0.6400	0.7619	0.8000	0.57	-0.2182
	80 ×	0.6071	0.7391	0.7727	0.52	-0.2435
	90 ×	0.5483	0.7083	0.7083	0.42	-0.3077
	100 ×	0.5294	0.6923	0.6923	0.38	-0.3077
40	10 ×	0.3928	0.61110	0.5238	0.06	-0.4303
	20 ×	0.4615	0.6000	0.6667	0.30	-0.3651
	30 ×	0.5106	0.6857	0.6667	0.34	-0.3237
	40 ×	0.5208	0.6756	0.6744	0.38	-0.3148
	50 ×	0.5192	0.6750	0.6923	0.38	-0.3162
	60 ×	0.5762	0.8333	0.7555	0.48	-0.2670
	70 ×	0.6809	0.8000	0.8205	0.63	-0.1895
	80 ×	0.6600	0.8250	0.7674	0.58	-0.2017
	90 ×	0.6538	0.7906	0.7555	0.53	-0.2262
	100 ×	0.6800	0.8500	0.7727	0.60	-0.1846
60	10 ×	0.4218	0.5869	0.6000	0.20	-0.4065
	20 ×	0.4247	0.5167	0.7045	0.30	-0.3779
	30 ×	0.4861	0.6250	0.6862	0.34	-0.3430
	40 ×	0.5441	0.6981	0.7115	0.42	-0.2951
	50 ×	0.5232	0.6818	0.6923	0.38	-0.3129
	60 ×	0.5000	0.6571	0.6765	0.34	-0.3331
	70 ×	0.5455	0.7000	0.7119	0.42	-0.2940
	80 ×	0.5000	0.6470	0.6875	0.35	-0.3321
	90 ×	0.6216	0.7667	0.7667	0.53	-0.2333
	100 ×	0.5444	0.7000	0.7101	0.41	-0.2949

ISSN: 1471-2105