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Table 4 The comparison of different algorithms

From: GenEpi: gene-based epistasis discovery using machine learning

Algorithm# Input SNPTime CostTop 15Top 30Top 45Top 60
GenEpi4,916,2499.950.760.720.710.68
BOOST4,916,2492157.60.310.240.300.37
ReliefF33,8680.110.520.480.450.46
FastEpistasis12,809,667836.80.620.610.600.59
  1. ‘Time Cost’ is the time spent on identifying the epistasis, which was measured by single CPU time in days. The values in column top 15, top 30, top 45 and top 60 are the 2-fold CV scores. The 2-fold CV scores are the F1 scores