Table 2 Comparison of classifier performance across different motif generation tools
From: Identifying glycan motifs using a novel subtree mining approach
Lectin | GLYMMR(mean) | GLYMMR(best) | Glycan Miner Tool | MotifFinder | CCARL |
|---|---|---|---|---|---|
Agaricus bisporus agglutinin (ABA) | 0.607 (0.151) | 0.776 (0.088) | 0.888 (0.067) | 0.905 | 0.934 (0.034) |
Concanavalin A (Con A) | 0.760 (0.083) | 0.875 (0.048) | 0.951 (0.042) | 0.937 | 0.971 (0.031) |
Dolichos biflorus agglutinin (DBA) | 0.630 (0.098) | 0.674 (0.126) | 0.722 (0.083) | 0.936 | 0.839 (0.069) |
Human DC-SIGN tetramer | 0.634 (0.132) | 0.727 (0.125) | 0.823 (0.130) | 0.538 | 0.841 (0.062) |
Griffonia simplicifolia Lectin I isolectin B4 (GSL I-B4) | 0.773 (0.103) | 0.847 (0.086) | 0.875 (0.066) | 0.875 | 0.867 (0.061) |
Influenza hemagglutinin (HA) (A/Puerto Rico/8/34) (H1N1) | 0.851 (0.140) | 0.889 (0.103) | 0.838 (0.144) | 0.643 | 0.917 (0.104) |
Influenza HA (A/harbor seal/Massachusetts/1/2011) (H3N8) | 0.925 (0.059) | 0.935 (0.034) | 0.947 (0.021) | 0.717 | 0.958 (0.028) |
Jacalin | 0.782 (0.061) | 0.804 (0.050) | 0.848 (0.026) | 0.726 | 0.882 (0.055) |
Lens culinaris agglutinin (LCA) | 0.772 (0.092) | 0.811 (0.083) | 0.908 (0.083) | 0.832 | 0.956 (0.037) |
Maackia amurensis lectin I (MAL-I) | 0.700 (0.054) | 0.758 (0.057) | 0.868 (0.050) | 0.873 | 0.833 (0.035) |
Maackia amurensis lectin II (MAL-II) | 0.600 (0.162) | 0.827 (0.056) | 0.850 (0.091) | 0.830 | 0.721 (0.073) |
Phaseolus vulgaris erythroagglutinin (PHA-E) | 0.817 (0.061) | 0.875 (0.044) | 0.910 (0.016) | 0.496 | 0.965 (0.021) |
Phaseolus vulgaris leucoagglutinin (PHA-L) | 0.805 (0.095) | 0.829 (0.089) | 0.858 (0.110) | 0.636 | 0.875 (0.132) |
Peanut agglutinin (PNA) | 0.668 (0.116) | 0.751 (0.133) | 0.894 (0.041) | 0.617 | 0.914 (0.048) |
Pisum sativum agglutinin (PSA) | 0.796 (0.070) | 0.830 (0.050) | 0.858 (0.064) | 0.694 | 0.891 (0.053) |
Ricinus communis agglutinin I (RCA I/RCA120) | 0.696 (0.053) | 0.751 (0.032) | 0.848 (0.034) | 0.909 | 0.953 (0.026) |
Soybean agglutinin (SBA) | 0.542 (0.061) | 0.582 (0.049) | 0.781 (0.046) | 0.775 | 0.875 (0.061) |
Sambucus nigra agglutinin (SNA) | 0.962 (0.051) | 0.963 (0.057) | 0.962 (0.050) | 0.820 | 0.961 (0.059) |
Ulex europaeus agglutinin I (UEA I) | 0.703 (0.099) | 0.734 (0.057) | 0.866 (0.023) | 0.951 | 0.859 (0.047) |
Wheat germ agglutinin (WGA) | 0.663 (0.048) | 0.697 (0.055) | 0.831 (0.034) | 0.817 | 0.883 (0.021) |