Skip to main content

Table 7 Error analysis on the test set

From: Knowledge-enhanced biomedical named entity recognition and normalization: application to proteins and genes

PNER category

Error type

Definition

#Errors

Error Percentage

PNER FPs

PNEN FPs caused by PNER FPs

Non-entities incorrectly recognized as entities during the PNER phase

995

17.59%

PNER FNs

PNEN FNs caused by PNER FNs

Entities not recognized during the PNER phase

2561

45.27%

PNER TPs

PNEN FPs caused by Missed ID

Entities that do not include the correct ID in the result retrieved by candidate ID generation

1376

24.32%

PNEN FPs caused by Incorrect ID

Entities assigned with the error ID by entity disambiguation

725

12.82%