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Table 6 Case study of the label sequence prediction performed by DTranNER and Unary-CRF

From: DTranNER: biomedical named entity recognition with deep learning-based label-label transition model

Diseases/Chemicals

Case 1

Unary-CRF

to enable diagnosis of ureteric stones or obstruction in patients with HIV infection who receive indinavir theraphy

 

DTranNER

to enable diagnosis of ureteric stones or obstruction in patients with HIV infection who receive indinavir theraphy

Case 2

Unary-CRF

The present study was designed to investigate whether nociceptin / orphanin FQ and nocistatin could modulate

  

impairment of learning and memory induced by scopolamine

 

DTranNER

The present study was designed to investigate whether nociceptin / orphanin FQ and nocistatin could modulate

  

impairment of learning and memory induced by scopolamine

Case 3

Unary-CRF

We report the case of a female patient with rheumatoid arthritis who developed acute cytolytic hepatitis due to meloxicam

 

DTranNER

We report the case of a female patient with rheumatoid arthritis who developed acute cytolytic hepatitis due to meloxicam

Case 4

Unary-CRF

Reduced nicotinamide adenine dinucleotide phosphate - diaphorase (NADPH - d) histochemistry was also employed to

 

DTranNER

Reduced nicotinamide adenine dinucleotide phosphate - diaphorase (NADPH - d) histochemistry was also employed to

Genes/Proteins

Case 5

Unary-CRF

The MIC90 of ABK against coagulase type IV strains was rather high, 12.5 micrograms/ml

 

DTranNER

The MIC90 of ABK against coagulase type IV strains was rather high, 12.5 micrograms/ml

Case 6

Unary-CRF

subtle differences between individual subunits that lead to species - specific properties of RNA polymerase I transcription

 

DTranNER

subtle differences between individual subunits that lead to species - specific properties of RNA polymerase I transcription

Case 7

Unary-CRF

The S. typhimurium aspartyl / asparaginyl beta - hydroxylase homologue (designated lpxO) was cloned into

 

DTranNER

The S. typhimurium aspartyl / asparaginyl beta - hydroxylase homologue (designated lpxO) was cloned into

  1. Note: Unary-CRF is the purpose-built model excluding Pairwise-Network from DTranNER. The named entities inferred by each model are underlined in sentences