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Table 6 Case study of the label sequence prediction performed by DTranNER and Unary-CRF

From: DTranNER: biomedical named entity recognition with deep learning-based label-label transition model

Diseases/Chemicals
Case 1Unary-CRFto enable diagnosis of ureteric stones or obstruction in patients with HIV infection who receive indinavir theraphy
 DTranNERto enable diagnosis of ureteric stones or obstruction in patients with HIV infection who receive indinavir theraphy
Case 2Unary-CRFThe present study was designed to investigate whether nociceptin / orphanin FQ and nocistatin could modulate
  impairment of learning and memory induced by scopolamine
 DTranNERThe present study was designed to investigate whether nociceptin / orphanin FQ and nocistatin could modulate
  impairment of learning and memory induced by scopolamine
Case 3Unary-CRFWe report the case of a female patient with rheumatoid arthritis who developed acute cytolytic hepatitis due to meloxicam
 DTranNERWe report the case of a female patient with rheumatoid arthritis who developed acute cytolytic hepatitis due to meloxicam
Case 4Unary-CRFReduced nicotinamide adenine dinucleotide phosphate - diaphorase (NADPH - d) histochemistry was also employed to
 DTranNERReduced nicotinamide adenine dinucleotide phosphate - diaphorase (NADPH - d) histochemistry was also employed to
Genes/Proteins
Case 5Unary-CRFThe MIC90 of ABK against coagulase type IV strains was rather high, 12.5 micrograms/ml
 DTranNERThe MIC90 of ABK against coagulase type IV strains was rather high, 12.5 micrograms/ml
Case 6Unary-CRFsubtle differences between individual subunits that lead to species - specific properties of RNA polymerase I transcription
 DTranNERsubtle differences between individual subunits that lead to species - specific properties of RNA polymerase I transcription
Case 7Unary-CRFThe S. typhimurium aspartyl / asparaginyl beta - hydroxylase homologue (designated lpxO) was cloned into
 DTranNERThe S. typhimurium aspartyl / asparaginyl beta - hydroxylase homologue (designated lpxO) was cloned into
  1. Note: Unary-CRF is the purpose-built model excluding Pairwise-Network from DTranNER. The named entities inferred by each model are underlined in sentences