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Table 4 AUC of the evaluated CNV callers on the TCGA AML dataset

From: CNV Radar: an improved method for somatic copy number alteration characterization in oncology

Caller AUC (gain) AUC (loss)
CNV Radar 0.83 0.96
CNVkit 0.79 0.80
CoNIFER_FCSVD0 0.43 0.10
CoNIFER_FCSVD1 0.08 0.02
CoNIFER_FCSVD2 0.05 0.03
CoNIFER_FCSVD3 0.04 0.03
CopywriteR 0.79 0.29
ExomeDepth 0.14 0.10
  1. AUC area under the receiver operating characteristic curve; CNV copy number variation; TCGA The Cancer Genome Atlas; AML acute myeloid leukemia; Radar Rapid aberration detection and reporting; CoNIFER copy number inference from exome reads