Table 3 Compared RPI-SE with other computational methods on RPI369, RPI488 and RPI1807 data sets
Data sets | Methods | Acc(%) | TPR(%) | TNR(%) | PPV(%) | MCC(%) | AUC |
|---|---|---|---|---|---|---|---|
RPI369 | IPMiner | 75.2 | 73.5 | 79.1 | 71.3 | 50.7 | 0.773 |
RPISeq-RF | 70.4 | 70.5 | 70.2 | 70.7 | 40.9 | 0.767 | |
lncPro | 70.4 | 70.8 | 69.6 | 71.3 | 40.9 | 0.740 | |
RPI-SAN | 74.9 | 74.1 | 78.7 | 71.7 | 50.4 | 0.778 | |
RPI-SE | 88.44 | 83.69 | 95.87 | 80.85 | 77.73 | 0.924 | |
RPI488 | IPMiner | 89.1 | 93.9 | 83.1 | 94.5 | 78.4 | 0.914 |
RPISeq-RF | 88.0 | 92.6 | 82.2 | 93.2 | 76.2 | 0.903 | |
lncPro | 87.0 | 90.0 | 82.7 | 91.0 | 74.0 | 0.901 | |
RPI-SAN | 89.7 | 94.3 | 83.7 | 95.2 | 79.3 | 0.920 | |
RPI-SE | 89.30 | 94.49 | 83.48 | 95.15 | 79.31 | 0.904 | |
RPI1807 | IPMiner | 98.6 | 98.2 | 99.3 | 97.8 | 97.2 | 0.998 |
RPISeq-RF | 97.3 | 96.8 | 98.4 | 96.0 | 94.6 | 0.996 | |
lncPro | 96.9 | 96.5 | 98.1 | 95.5 | 93.8 | 0.994 | |
RPI-SAN | 96.1 | 93.6 | 99.9 | 91.4 | 92.4 | 0.999 | |
RPI-SE | 96.86 | 96.71 | 97.69 | 95.83 | 93.65 | 0.994 |