Fig. 4

False discovery proportion of various methods. Boxplots of false discovery proportion (FDP) (y-axis) for various differential expression analysis methods (x-axis) when applied on different simulated datasets (color). Benjamini-Hochberg was used to control for false discovery rate at the 0.05 level (horizontal dashed line). Only voom-limma controls false discovery rate at the nominal level. The FDP is more variable among the seqgendiff datasets than among the powsimR datasets