Table 4 A brief summary of related deep-learning-based basecallers
From: Nanopore basecalling from a perspective of instance segmentation
Module | Chiron | Guppy | URnano |
|---|---|---|---|
Input | Raw | Raw | Raw |
Networks | CNN+RNN+CTC | RGRGR+CTC | UR-net |
Output | bases | bases | base masks |
Post-process | N/A | N/A | label transform |