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Table 4 Functions of gene products

From: Discovery of significant porcine SNPs for swine breed identification by a hybrid of information gain, genetic algorithm, and frequency feature selection technique

No.

Gene symbol

Gene ontology biological process complete

1

PTPRK

transforming growth factor beta receptor signaling pathway (GO:0007179);

  

negative regulation of keratinocyte proliferation (GO:0010839); cell migration (GO:0016477);

  

negative regulation of cell migration (GO:0030336); protein localization to cell surface (GO:0034394);

  

cellular response to reactive oxygen species (GO:0034614); cellular response to UV (GO:0034644);

  

peptidyl-tyrosine dephosphorylation (GO:0035335); negative regulation of cell cycle (GO:0045786);

  

negative regulation of transcription; DNA-templated (GO:0045892); focal adhesion assembly (GO:0048041)

2

ABCA5

negative regulation of macrophage derived foam cell differentiation (GO:0010745);

  

cholesterol transport (GO:0030301); cholesterol efflux (GO:0033344);

  

high-density lipoprotein particle remodeling (GO:0034375); transmembrane transport (GO:0055085)

3

SEMA3E

branching involved in blood vessel morphogenesis (GO:0001569);

  

negative regulation of cell-matrix adhesion (GO:0001953);

  

sprouting angiogenesis (GO:0002040); regulation of cell shape (GO:0008360);

  

negative regulation of angiogenesis (GO:0016525); synapse organization (GO:0050808);

  

negative chemotaxis (GO:0050919); semaphorin-plexin signaling pathway (GO:0071526);

  

regulation of actin cytoskeleton reorganization (GO:2000249)

4

KCNU1

potassium ion transport (GO:0006813); ion transmembrane transport (GO:0034220);

  

potassium ion transmembrane transport (GO:0071805)

5

SLC28A3

pyrimidine nucleobase transport (GO:0015855); purine nucleoside transmembrane transport

  

(GO:0015860);

  

pyrimidine nucleoside transport (GO:0015864); sodiumion transmembrane transport (GO:0035725);

  

pyrimidine-containing compound transmembrane transport (GO:0072531); purine nucleobase

  

transmembrane transport (GO:1904823)