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Table 2 Comparison of RDb2C2 against DeepECA, RDb2C and bbcontacts on proteins from the BetaSheet916 and BetaSheet1452 sets

From: RDb2C2: an improved method to identify the residue-residue pairing in β strands

 Precision (%)Recall (%)F1-score (%)AUPRC (%)
BetaSheet916RDb2C277.3467.8072.2673.29
DeepECA21.3160.7631.5516.24
RDb2C69.9154.8161.4559.88
bbcontacts59.1853.4156.15NA
BetaSheet1452RDb2C278.7168.4473.2274.15
DeepECA20.9960.2431.1315.83
RDb2C69.1058.1963.1861.87
bbcontacts60.0455.2157.52NA
  1. Evaluation of AUPRC is not applicable for bbcontacts, because this program only outputs prediction results for a part of residues pairs with high scores. Precision and recall values are obtained at the cutoff of optimal F1-score