Skip to main content

Table 2 Comparison of RDb2C2 against DeepECA, RDb2C and bbcontacts on proteins from the BetaSheet916 and BetaSheet1452 sets

From: RDb2C2: an improved method to identify the residue-residue pairing in β strands

 

Precision (%)

Recall (%)

F1-score (%)

AUPRC (%)

BetaSheet916

RDb2C2

77.34

67.80

72.26

73.29

DeepECA

21.31

60.76

31.55

16.24

RDb2C

69.91

54.81

61.45

59.88

bbcontacts

59.18

53.41

56.15

NA

BetaSheet1452

RDb2C2

78.71

68.44

73.22

74.15

DeepECA

20.99

60.24

31.13

15.83

RDb2C

69.10

58.19

63.18

61.87

bbcontacts

60.04

55.21

57.52

NA

  1. Evaluation of AUPRC is not applicable for bbcontacts, because this program only outputs prediction results for a part of residues pairs with high scores. Precision and recall values are obtained at the cutoff of optimal F1-score
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us