Table 4 Six features of our method
From: A single-model quality assessment method for poor quality protein structure
Feature Name | Descriptions |
|---|---|
DOAP score | A statistical potential score for assessment and prediction of protein structures. |
GOAP score | A generalized orientation-dependent, all-atom statistical potential score. |
Secondary structure penalty score for helix | Calculate different ratios of predicted alpha-helix from amino acid sequence and a model parsed by DSSP. |
Secondary structure penalty score for strand | Calculate different ratios of predicted beta-strand from amino acid sequence and a model parsed by DSSP. |
Solvent accessibility penalty score | The difference of solvent accessibility prediction and model parsed by DSSP. |
Contact penalty score | The percentage of contact prediction matching with the model structure. |