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Table 1 Comparison of the window-based methods Centroid, INDeGenIUS, SigHunt, and the proposed 2SigFinder on classification of GIs/non-GI datasets. The precision, recall and overall accuracy of each method are calculated based on the number of overlapping nucleotides in both published GIs and predicted GIs

From: 2SigFinder: the combined use of small-scale and large-scale statistical testing for genomic island detection from a single genome

Method

Predicted GI

At Nucleotide Level (%)

Total Length

Total Number

Average Length

Accuracy

Precision

Recall

Centroid

5,573,339

320

17,417

82.37

61.35

27.63

INDeGenIUS

3,641,371

277

13,146

82.43

67.94

19.99

SigHunt

5,813,441

758

4670

80.54

51.00

23.95

2SigFinder

7,758,374

346

22,423

85.16

66.59

49.05