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Table 4 Summary of functional features predicted by 2SigFinder, SIGI-HMM, Alien_Hunter, Centroid, IslandPath-DIMOB, INDeGenIUS, SigHunt and IslandPick on detection of genomic islands in S. enterica Typhi CT18, and the functional features were based on the number of the related genes in the real genomic islands which are covered by more than 50% of the results of the prediction method

From: 2SigFinder: the combined use of small-scale and large-scale statistical testing for genomic island detection from a single genome

  

Pathogenicity

Integrase

Phage

tRNA

HEG

Transposase

Virulence

Repeats

IS

Genuine GI

 

27

5

130

1

36

9

2

2

3

Predicted

GIS

IslandPick

0

1

10

0

8

0

0

0

0

IslandPath-DIMOB

0

2

58

0

10

1

0

0

0

Sigi-HMM

16

0

5

0

6

3

0

0

0

Alien_Hunter

25

4

65

1

23

6

2

2

3

Centroid

4

0

3

1

3

0

2

1

0

INDeGenIUS

5

2

1

1

7

0

2

0

0

SigHunt

0

1

15

0

1

2

0

2

0

2SigFinder

25

3

101

1

28

2

2

2

2