Table 6 Overall length of the predicted genomic islands, true positives and false positives of all of the evaluated methods at the nucleotide level in S. enterica Typhi CT18
Method | True positives | False positives | Overall length of PGIs |
|---|---|---|---|
IslandPick | 106,587 | 206 | 106,793 |
IslandPath | 233,096 | 58,168 | 291,264 |
SIGI-HMM | 137,308 | 103,846 | 241,154 |
Alien_Hunter | 449,085 | 531,001 | 980,086 |
Centroid | 68,483 | 105,517 | 174,000 |
INDeGenIUS | 61,214 | 58,786 | 120,000 |
SigHunt | 102,160 | 155,840 | 258,000 |
2SigFinder | 357,218 | 97,551 | 454,769 |