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Table 4 Evaluation against the CDR corpus

From: Broad-coverage biomedical relation extraction with SemRep

 

Precision

Recall

F 1

SemRep-ALL

0.90

0.24

0.38

SemRep-SENTENCE

0.90

0.35

0.50

Xu et al. [19]

0.56

0.58

0.57

Peng et al. [20]

0.66

0.57

0.61

  1. SemRep-ALL indicates the case in which all ground truth relations are taken into account. SemRep-SENTENCE indicates the scenario in which only the intra-sentence ground truth relations are considered. Xu et al. [19] was the top-ranking system in the BioCreative V CID task and Peng et al. [20] reported best post-challenge results. Both systems perform end-to-end relation extraction