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Table 1 The data sources used in miRTIssue ce and their data types

From: miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions

Data source

Data type

Url

Ref.

miRSponge

experimental validated ceRNA interactions

http://bio-bigdata.hrbmu.edu.cn/miRSponge/

[30]

LNCACTdb 2.0

experimental validated lncRNA-associated ceRNA interactions

http://www.bio-bigdata.net/LncACTdb/index.html

[34]

miRCode

Predicted miRNA-target interaction including lncRNA and pseudogene

http://www.mircode.org/index.php

[29]

miRTarBase

experimental validated miRNA-target interactions

http://mirtarbase.mbc.nctu.edu.tw/php/index.php

[64]

TCGA

Expression profiles of coding and non-coding RNA of different tissue types

https://www.cancer.gov/tcga

[65]

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BMC Bioinformatics

ISSN: 1471-2105

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