Fig. 5

Alignments with generated color schemes. Gaps have no color assigned, since a gap means the absence of a symbol. a The alignment from Fig. 1 is visualized with a color scheme generated with Gecos. The L* value was constrained between 60 and 75. Otherwise the shown results use the default parameters of the CLI invocation. b Generated color scheme for PAM250 instead of BLOSUM62. c Red-green color vision deficiency adapted color scheme by removing the green part of the color space. The range for the L* value was broadened from 50 to 80. d Color scheme for the protein blocks (PB) structural alphabet. The PB sequences were calculated from structures of lysozyme variants. The substitution matrix and references angles were taken from Barnoud et al. [19]