Table 2 Comparison of contigs produced from in silico reads from the BASV virus
From: ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
BASV (11.9 kb) | Error rate = 0.01 | Error rate = 0.05 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read length (bp) | Depth (x) | Spike-in peaks | Contig Extender (kb) | PRICE (kb) | GenSeed (kb) | Kollector (kb) | Meta SPAdes (kb) | Contig Extender (kb) | PRICE (kb) | GenSeed (kb) | Kollector (kb) | Meta SPAdes (kb) |
100 | 10 | 6.7 | 1.6 | 1.1 | 1.8 | 6.7 | 1.9 | 1.3 | NA | NA | 1.8 | |
20 | 11.9 | 11.9 | 1.1 | 2.7 | 11.9 | 11.9 | 11.8 | NA | NA | 7.9 | ||
20 | Yes | 11.9 | 11.8 | 1.1 | 2.7 | 11.9 | 11.9 | 11.9 | NA | NA | 7.9 | |
50 | 11.9 | 11.9 | 1.1 | 4.9 | 11.9 | 11.9 | 11.8 | 1.1 | NA | 7.9 | ||
250 | 10 | 11.8 | 7.2 | 1.1 | 1.1 | 7.9 | 8.4 | 7.3 | NA | NA | 7.6 | |
20 | 11.9 | 11.7 | 1.3 | 2.3 | 7.9 | 11.8 | 11.8 | NA | NA | 7.8 | ||
20 | Yes | 11.9 | 11.5 | 1.3 | 2.3 | 7.9 | 11.8 | NA | NA | NA | 7.9 | |
50 | 11.9 | 11.8 | 1.4 | 2.4 | 7.9 | 11.9 | 11.9 | NA | NA | 11.9 | ||